Click here to close now.


Microsoft Cloud Authors: Jayaram Krishnaswamy, Elizabeth White, Andreas Grabner, Jim Kaskade, Pat Romanski

Blog Feed Post

Diving into H2O

by Joseph Rickert One of the remarkable features of the R language is its adaptability. Motivated by R’s popularity and helped by R’s expressive power and transparency developers working on other platforms display what looks like inexhaustible creativity in providing seamless interfaces to software that complements R’s strengths. The H2O R package that connects to 0xdata’s H2O software (Apache 2.0 License) is an example of this kind of creativity. According to the 0xdata website, H2O is “The Open Source In-Memory, Prediction Engine for Big Data Science”. Indeed, H2O offers an impressive array of machine learning algorithms. The H2O R package provides functions for building GLM, GBM, Kmeans, Naive Bayes, Principal Components Analysis, Principal Components Regression, Random Forests and Deep Learning (multi-layer neural net models). Examples with timing information of running all of these models on fairly large data sets are available on the 0xdata website. Execution speeds are very impressive. In this post, I thought I would start a little slower and look at H2O from an R point of View. H2O is a Java Virtual Machine that is optimized for doing “in memory” processing of distributed, parallel machine learning algorithms on clusters. A “cluster” is a software construct that can be can be fired up on your laptop, on a server, or across the multiple nodes of a cluster of real machines, including computers that form a Hadoop cluster. According to the documentation a cluster’s “memory capacity is the sum across all H2O nodes in the cluster”. So, as I understand it, if you were to build a 16 node cluster of machines each having 64GB of DRAM, and you installed H2O everything then you could run the H2O machine learning algorithms using a terabyte of memory. Underneath the covers, the H2O JVM sits on an in-memory, non-persistent key-value (KV) store that uses a distributed JAVA memory model. The KV store holds state information, all results and the big data itself. H2O keeps the data in a heap. When the heap gets full, i.e. when you are working with more data than physical DRAM, H20 swaps to disk. (See Cliff Click’s blog for the details.) The main point here is that the data is not in R. R only has a pointer to the data, an S4 object containing the IP address, port and key name for the data sitting in H2O. The R H2O package communicates with the H2O JVM over a REST API. R sends RCurl commands and H2O sends back JSON responses. Data ingestion, however, does not happen via the REST API. Rather, an R user calls a function that causes the data to be directly parsed into the H2O KV store. The H2O R package provides several functions for doing this Including: h20.importFile() which imports and parses files from a local directory, h20.importURL() which imports and pareses files from a website, and h2o.importHDFS() which imports and parses HDFS files sitting on a Hadoop cluster. So much for the background: let’s get started with H2O. The first thing you need to do is to get Java running on your machine. If you don’t already have Java the default download ought to be just fine. Then fetch and install the H2O R package. Note that the h2o.jar executable is currently shipped with the h2o R package. The following code from the 0xdata website ran just fine from RStudio on my PC: # The following two commands remove any previously installed H2O packages for R. if ("package:h2o" %in% search()) { detach("package:h2o", unload=TRUE) } if ("h2o" %in% rownames(installed.packages())) { remove.packages("h2o") }   # Next, we download, install and initialize the H2O package for R. install.packages("h2o", repos=(c("", getOption("repos"))))   library(h2o) localH2O = h2o.init()   # Finally, let's run a demo to see H2O at work. demo(h2o.glm) Created by Pretty R at Note that the function h20.init() uses the defaults to start up R on your local machine. Users can also provide parameters to specify an IP address and port number in order to connect to a remote instance of H20 running on a cluster. h2o.init(Xmx="10g") will start up the H2O KV store with 10GB of RAM. demo(h2o,glm) runs the glm demo to let you know that everything is working just fine. I will save examining the model for another time. Instead let's look at some other H2O functionality. The first thing to get straight with H2O is to be clear about when you are working in R and when you are working in the H2O JVM. The H2O R package implements several R functions that are wrappers to H2O native functions. "H2O supports an R-like language" (See a note on R) but sometimes things behave differently than an R programmer might expect. For example, the R code: y <- apply(iris[,1:4],2,sum)y produces the following result: sepal.length sepal.width petal.length petal.width 876.5    458.6 563.7  179.9 now, let's see how things work in h2o, code loads h2o package, starts a local instance of uploads iris data set into from r package and produces very r-like summary. library(h2o) # load library localh2o =h2o.init() initial locl instance # upload file instance iris.hex >

Read the original blog entry...

More Stories By David Smith

David Smith is Vice President of Marketing and Community at Revolution Analytics. He has a long history with the R and statistics communities. After graduating with a degree in Statistics from the University of Adelaide, South Australia, he spent four years researching statistical methodology at Lancaster University in the United Kingdom, where he also developed a number of packages for the S-PLUS statistical modeling environment. He continued his association with S-PLUS at Insightful (now TIBCO Spotfire) overseeing the product management of S-PLUS and other statistical and data mining products.<

David smith is the co-author (with Bill Venables) of the popular tutorial manual, An Introduction to R, and one of the originating developers of the ESS: Emacs Speaks Statistics project. Today, he leads marketing for REvolution R, supports R communities worldwide, and is responsible for the Revolutions blog. Prior to joining Revolution Analytics, he served as vice president of product management at Zynchros, Inc. Follow him on twitter at @RevoDavid

@ThingsExpo Stories
The broad selection of hardware, the rapid evolution of operating systems and the time-to-market for mobile apps has been so rapid that new challenges for developers and engineers arise every day. Security, testing, hosting, and other metrics have to be considered through the process. In his session at Big Data Expo, Walter Maguire, Chief Field Technologist, HP Big Data Group, at Hewlett-Packard, will discuss the challenges faced by developers and a composite Big Data applications builder, focusing on how to help solve the problems that developers are continuously battling.
Nowadays, a large number of sensors and devices are connected to the network. Leading-edge IoT technologies integrate various types of sensor data to create a new value for several business decision scenarios. The transparent cloud is a model of a new IoT emergence service platform. Many service providers store and access various types of sensor data in order to create and find out new business values by integrating such data.
There are so many tools and techniques for data analytics that even for a data scientist the choices, possible systems, and even the types of data can be daunting. In his session at @ThingsExpo, Chris Harrold, Global CTO for Big Data Solutions for EMC Corporation, will show how to perform a simple, but meaningful analysis of social sentiment data using freely available tools that take only minutes to download and install. Participants will get the download information, scripts, and complete end-to-end walkthrough of the analysis from start to finish. Participants will also be given the pract...
WebRTC: together these advances have created a perfect storm of technologies that are disrupting and transforming classic communications models and ecosystems. In his session at WebRTC Summit, Cary Bran, VP of Innovation and New Ventures at Plantronics and PLT Labs, will provide an overview of this technological shift, including associated business and consumer communications impacts, and opportunities it may enable, complement or entirely transform.
SYS-CON Events announced today that Dyn, the worldwide leader in Internet Performance, will exhibit at SYS-CON's 17th International Cloud Expo®, which will take place on November 3-5, 2015, at the Santa Clara Convention Center in Santa Clara, CA. Dyn is a cloud-based Internet Performance company. Dyn helps companies monitor, control, and optimize online infrastructure for an exceptional end-user experience. Through a world-class network and unrivaled, objective intelligence into Internet conditions, Dyn ensures traffic gets delivered faster, safer, and more reliably than ever.
WebRTC services have already permeated corporate communications in the form of videoconferencing solutions. However, WebRTC has the potential of going beyond and catalyzing a new class of services providing more than calls with capabilities such as mass-scale real-time media broadcasting, enriched and augmented video, person-to-machine and machine-to-machine communications. In his session at @ThingsExpo, Luis Lopez, CEO of Kurento, will introduce the technologies required for implementing these ideas and some early experiments performed in the Kurento open source software community in areas ...
Too often with compelling new technologies market participants become overly enamored with that attractiveness of the technology and neglect underlying business drivers. This tendency, what some call the “newest shiny object syndrome,” is understandable given that virtually all of us are heavily engaged in technology. But it is also mistaken. Without concrete business cases driving its deployment, IoT, like many other technologies before it, will fade into obscurity.
Today air travel is a minefield of delays, hassles and customer disappointment. Airlines struggle to revitalize the experience. GE and M2Mi will demonstrate practical examples of how IoT solutions are helping airlines bring back personalization, reduce trip time and improve reliability. In their session at @ThingsExpo, Shyam Varan Nath, Principal Architect with GE, and Dr. Sarah Cooper, M2Mi's VP Business Development and Engineering, will explore the IoT cloud-based platform technologies driving this change including privacy controls, data transparency and integration of real time context w...
The IoT market is on track to hit $7.1 trillion in 2020. The reality is that only a handful of companies are ready for this massive demand. There are a lot of barriers, paint points, traps, and hidden roadblocks. How can we deal with these issues and challenges? The paradigm has changed. Old-style ad-hoc trial-and-error ways will certainly lead you to the dead end. What is mandatory is an overarching and adaptive approach to effectively handle the rapid changes and exponential growth.
Who are you? How do you introduce yourself? Do you use a name, or do you greet a friend by the last four digits of his social security number? Assuming you don’t, why are we content to associate our identity with 10 random digits assigned by our phone company? Identity is an issue that affects everyone, but as individuals we don’t spend a lot of time thinking about it. In his session at @ThingsExpo, Ben Klang, Founder & President of Mojo Lingo, will discuss the impact of technology on identity. Should we federate, or not? How should identity be secured? Who owns the identity? How is identity ...
The buzz continues for cloud, data analytics and the Internet of Things (IoT) and their collective impact across all industries. But a new conversation is emerging - how do companies use industry disruption and technology enablers to lead in markets undergoing change, uncertainty and ambiguity? Organizations of all sizes need to evolve and transform, often under massive pressure, as industry lines blur and merge and traditional business models are assaulted and turned upside down. In this new data-driven world, marketplaces reign supreme while interoperability, APIs and applications deliver un...
Electric power utilities face relentless pressure on their financial performance, and reducing distribution grid losses is one of the last untapped opportunities to meet their business goals. Combining IoT-enabled sensors and cloud-based data analytics, utilities now are able to find, quantify and reduce losses faster – and with a smaller IT footprint. Solutions exist using Internet-enabled sensors deployed temporarily at strategic locations within the distribution grid to measure actual line loads.
The Internet of Everything is re-shaping technology trends–moving away from “request/response” architecture to an “always-on” Streaming Web where data is in constant motion and secure, reliable communication is an absolute necessity. As more and more THINGS go online, the challenges that developers will need to address will only increase exponentially. In his session at @ThingsExpo, Todd Greene, Founder & CEO of PubNub, will explore the current state of IoT connectivity and review key trends and technology requirements that will drive the Internet of Things from hype to reality.
The Internet of Things (IoT) is growing rapidly by extending current technologies, products and networks. By 2020, Cisco estimates there will be 50 billion connected devices. Gartner has forecast revenues of over $300 billion, just to IoT suppliers. Now is the time to figure out how you’ll make money – not just create innovative products. With hundreds of new products and companies jumping into the IoT fray every month, there’s no shortage of innovation. Despite this, McKinsey/VisionMobile data shows "less than 10 percent of IoT developers are making enough to support a reasonably sized team....
You have your devices and your data, but what about the rest of your Internet of Things story? Two popular classes of technologies that nicely handle the Big Data analytics for Internet of Things are Apache Hadoop and NoSQL. Hadoop is designed for parallelizing analytical work across many servers and is ideal for the massive data volumes you create with IoT devices. NoSQL databases such as Apache HBase are ideal for storing and retrieving IoT data as “time series data.”
Today’s connected world is moving from devices towards things, what this means is that by using increasingly low cost sensors embedded in devices we can create many new use cases. These span across use cases in cities, vehicles, home, offices, factories, retail environments, worksites, health, logistics, and health. These use cases rely on ubiquitous connectivity and generate massive amounts of data at scale. These technologies enable new business opportunities, ways to optimize and automate, along with new ways to engage with users.
The IoT is upon us, but today’s databases, built on 30-year-old math, require multiple platforms to create a single solution. Data demands of the IoT require Big Data systems that can handle ingest, transactions and analytics concurrently adapting to varied situations as they occur, with speed at scale. In his session at @ThingsExpo, Chad Jones, chief strategy officer at Deep Information Sciences, will look differently at IoT data so enterprises can fully leverage their IoT potential. He’ll share tips on how to speed up business initiatives, harness Big Data and remain one step ahead by apply...
There will be 20 billion IoT devices connected to the Internet soon. What if we could control these devices with our voice, mind, or gestures? What if we could teach these devices how to talk to each other? What if these devices could learn how to interact with us (and each other) to make our lives better? What if Jarvis was real? How can I gain these super powers? In his session at 17th Cloud Expo, Chris Matthieu, co-founder and CTO of Octoblu, will show you!
SYS-CON Events announced today that ProfitBricks, the provider of painless cloud infrastructure, will exhibit at SYS-CON's 17th International Cloud Expo®, which will take place on November 3–5, 2015, at the Santa Clara Convention Center in Santa Clara, CA. ProfitBricks is the IaaS provider that offers a painless cloud experience for all IT users, with no learning curve. ProfitBricks boasts flexible cloud servers and networking, an integrated Data Center Designer tool for visual control over the cloud and the best price/performance value available. ProfitBricks was named one of the coolest Clo...
As a company adopts a DevOps approach to software development, what are key things that both the Dev and Ops side of the business must keep in mind to ensure effective continuous delivery? In his session at DevOps Summit, Mark Hydar, Head of DevOps, Ericsson TV Platforms, will share best practices and provide helpful tips for Ops teams to adopt an open line of communication with the development side of the house to ensure success between the two sides.