Welcome!

Microsoft Cloud Authors: John Basso, Pat Romanski, Liz McMillan, Glenn Rossman, Elizabeth White

Blog Feed Post

Diving into H2O

by Joseph Rickert One of the remarkable features of the R language is its adaptability. Motivated by R’s popularity and helped by R’s expressive power and transparency developers working on other platforms display what looks like inexhaustible creativity in providing seamless interfaces to software that complements R’s strengths. The H2O R package that connects to 0xdata’s H2O software (Apache 2.0 License) is an example of this kind of creativity. According to the 0xdata website, H2O is “The Open Source In-Memory, Prediction Engine for Big Data Science”. Indeed, H2O offers an impressive array of machine learning algorithms. The H2O R package provides functions for building GLM, GBM, Kmeans, Naive Bayes, Principal Components Analysis, Principal Components Regression, Random Forests and Deep Learning (multi-layer neural net models). Examples with timing information of running all of these models on fairly large data sets are available on the 0xdata website. Execution speeds are very impressive. In this post, I thought I would start a little slower and look at H2O from an R point of View. H2O is a Java Virtual Machine that is optimized for doing “in memory” processing of distributed, parallel machine learning algorithms on clusters. A “cluster” is a software construct that can be can be fired up on your laptop, on a server, or across the multiple nodes of a cluster of real machines, including computers that form a Hadoop cluster. According to the documentation a cluster’s “memory capacity is the sum across all H2O nodes in the cluster”. So, as I understand it, if you were to build a 16 node cluster of machines each having 64GB of DRAM, and you installed H2O everything then you could run the H2O machine learning algorithms using a terabyte of memory. Underneath the covers, the H2O JVM sits on an in-memory, non-persistent key-value (KV) store that uses a distributed JAVA memory model. The KV store holds state information, all results and the big data itself. H2O keeps the data in a heap. When the heap gets full, i.e. when you are working with more data than physical DRAM, H20 swaps to disk. (See Cliff Click’s blog for the details.) The main point here is that the data is not in R. R only has a pointer to the data, an S4 object containing the IP address, port and key name for the data sitting in H2O. The R H2O package communicates with the H2O JVM over a REST API. R sends RCurl commands and H2O sends back JSON responses. Data ingestion, however, does not happen via the REST API. Rather, an R user calls a function that causes the data to be directly parsed into the H2O KV store. The H2O R package provides several functions for doing this Including: h20.importFile() which imports and parses files from a local directory, h20.importURL() which imports and pareses files from a website, and h2o.importHDFS() which imports and parses HDFS files sitting on a Hadoop cluster. So much for the background: let’s get started with H2O. The first thing you need to do is to get Java running on your machine. If you don’t already have Java the default download ought to be just fine. Then fetch and install the H2O R package. Note that the h2o.jar executable is currently shipped with the h2o R package. The following code from the 0xdata website ran just fine from RStudio on my PC: # The following two commands remove any previously installed H2O packages for R. if ("package:h2o" %in% search()) { detach("package:h2o", unload=TRUE) } if ("h2o" %in% rownames(installed.packages())) { remove.packages("h2o") }   # Next, we download, install and initialize the H2O package for R. install.packages("h2o", repos=(c("http://s3.amazonaws.com/h2o-release/h2o/rel-kahan/5/R", getOption("repos"))))   library(h2o) localH2O = h2o.init()   # Finally, let's run a demo to see H2O at work. demo(h2o.glm) Created by Pretty R at inside-R.org Note that the function h20.init() uses the defaults to start up R on your local machine. Users can also provide parameters to specify an IP address and port number in order to connect to a remote instance of H20 running on a cluster. h2o.init(Xmx="10g") will start up the H2O KV store with 10GB of RAM. demo(h2o,glm) runs the glm demo to let you know that everything is working just fine. I will save examining the model for another time. Instead let's look at some other H2O functionality. The first thing to get straight with H2O is to be clear about when you are working in R and when you are working in the H2O JVM. The H2O R package implements several R functions that are wrappers to H2O native functions. "H2O supports an R-like language" (See a note on R) but sometimes things behave differently than an R programmer might expect. For example, the R code: y <- apply(iris[,1:4],2,sum)y produces the following result: sepal.length sepal.width petal.length petal.width 876.5    458.6 563.7  179.9 now, let's see how things work in h2o, code loads h2o package, starts a local instance of uploads iris data set into from r package and produces very r-like summary. library(h2o) # load library localh2o =h2o.init() initial locl instance # upload file instance iris.hex >

Read the original blog entry...

More Stories By David Smith

David Smith is Vice President of Marketing and Community at Revolution Analytics. He has a long history with the R and statistics communities. After graduating with a degree in Statistics from the University of Adelaide, South Australia, he spent four years researching statistical methodology at Lancaster University in the United Kingdom, where he also developed a number of packages for the S-PLUS statistical modeling environment. He continued his association with S-PLUS at Insightful (now TIBCO Spotfire) overseeing the product management of S-PLUS and other statistical and data mining products.<

David smith is the co-author (with Bill Venables) of the popular tutorial manual, An Introduction to R, and one of the originating developers of the ESS: Emacs Speaks Statistics project. Today, he leads marketing for REvolution R, supports R communities worldwide, and is responsible for the Revolutions blog. Prior to joining Revolution Analytics, he served as vice president of product management at Zynchros, Inc. Follow him on twitter at @RevoDavid

@ThingsExpo Stories
The Internet of Things will challenge the status quo of how IT and development organizations operate. Or will it? Certainly the fog layer of IoT requires special insights about data ontology, security and transactional integrity. But the developmental challenges are the same: People, Process and Platform. In his session at @ThingsExpo, Craig Sproule, CEO of Metavine, demonstrated how to move beyond today's coding paradigm and shared the must-have mindsets for removing complexity from the develo...
The IETF draft standard for M2M certificates is a security solution specifically designed for the demanding needs of IoT/M2M applications. In his session at @ThingsExpo, Brian Romansky, VP of Strategic Technology at TrustPoint Innovation, explained how M2M certificates can efficiently enable confidentiality, integrity, and authenticity on highly constrained devices.
In today's uber-connected, consumer-centric, cloud-enabled, insights-driven, multi-device, global world, the focus of solutions has shifted from the product that is sold to the person who is buying the product or service. Enterprises have rebranded their business around the consumers of their products. The buyer is the person and the focus is not on the offering. The person is connected through multiple devices, wearables, at home, on the road, and in multiple locations, sometimes simultaneously...
Basho Technologies has announced the latest release of Basho Riak TS, version 1.3. Riak TS is an enterprise-grade NoSQL database optimized for Internet of Things (IoT). The open source version enables developers to download the software for free and use it in production as well as make contributions to the code and develop applications around Riak TS. Enhancements to Riak TS make it quick, easy and cost-effective to spin up an instance to test new ideas and build IoT applications. In addition to...
Identity is in everything and customers are looking to their providers to ensure the security of their identities, transactions and data. With the increased reliance on cloud-based services, service providers must build security and trust into their offerings, adding value to customers and improving the user experience. Making identity, security and privacy easy for customers provides a unique advantage over the competition.
CenturyLink has announced that application server solutions from GENBAND are now available as part of CenturyLink’s Networx contracts. The General Services Administration (GSA)’s Networx program includes the largest telecommunications contract vehicles ever awarded by the federal government. CenturyLink recently secured an extension through spring 2020 of its offerings available to federal government agencies via GSA’s Networx Universal and Enterprise contracts. GENBAND’s EXPERiUS™ Application...
"We've discovered that after shows 80% if leads that people get, 80% of the conversations end up on the show floor, meaning people forget about it, people forget who they talk to, people forget that there are actual business opportunities to be had here so we try to help out and keep the conversations going," explained Jeff Mesnik, Founder and President of ContentMX, in this SYS-CON.tv interview at 18th Cloud Expo, held June 7-9, 2016, at the Javits Center in New York City, NY.
I wanted to gather all of my Internet of Things (IOT) blogs into a single blog (that I could later use with my University of San Francisco (USF) Big Data “MBA” course). However as I started to pull these blogs together, I realized that my IOT discussion lacked a vision; it lacked an end point towards which an organization could drive their IOT envisioning, proof of value, app dev, data engineering and data science efforts. And I think that the IOT end point is really quite simple…
Internet of @ThingsExpo, taking place November 1-3, 2016, at the Santa Clara Convention Center in Santa Clara, CA, is co-located with the 19th International Cloud Expo and will feature technical sessions from a rock star conference faculty and the leading industry players in the world and ThingsExpo Silicon Valley Call for Papers is now open.
You think you know what’s in your data. But do you? Most organizations are now aware of the business intelligence represented by their data. Data science stands to take this to a level you never thought of – literally. The techniques of data science, when used with the capabilities of Big Data technologies, can make connections you had not yet imagined, helping you discover new insights and ask new questions of your data. In his session at @ThingsExpo, Sarbjit Sarkaria, data science team lead ...
WebRTC is bringing significant change to the communications landscape that will bridge the worlds of web and telephony, making the Internet the new standard for communications. Cloud9 took the road less traveled and used WebRTC to create a downloadable enterprise-grade communications platform that is changing the communication dynamic in the financial sector. In his session at @ThingsExpo, Leo Papadopoulos, CTO of Cloud9, discussed the importance of WebRTC and how it enables companies to focus...
"My role is working with customers, helping them go through this digital transformation. I spend a lot of time talking to banks, big industries, manufacturers working through how they are integrating and transforming their IT platforms and moving them forward," explained William Morrish, General Manager Product Sales at Interoute, in this SYS-CON.tv interview at 18th Cloud Expo, held June 7-9, 2016, at the Javits Center in New York City, NY.
SYS-CON Events announced today that 910Telecom will exhibit at the 19th International Cloud Expo, which will take place on November 1–3, 2016, at the Santa Clara Convention Center in Santa Clara, CA. Housed in the classic Denver Gas & Electric Building, 910 15th St., 910Telecom is a carrier-neutral telecom hotel located in the heart of Denver. Adjacent to CenturyLink, AT&T, and Denver Main, 910Telecom offers connectivity to all major carriers, Internet service providers, Internet backbones and ...
SYS-CON Events announced today that LeaseWeb USA, a cloud Infrastructure-as-a-Service (IaaS) provider, will exhibit at the 19th International Cloud Expo, which will take place on November 1–3, 2016, at the Santa Clara Convention Center in Santa Clara, CA. LeaseWeb is one of the world's largest hosting brands. The company helps customers define, develop and deploy IT infrastructure tailored to their exact business needs, by combining various kinds cloud solutions.
For basic one-to-one voice or video calling solutions, WebRTC has proven to be a very powerful technology. Although WebRTC’s core functionality is to provide secure, real-time p2p media streaming, leveraging native platform features and server-side components brings up new communication capabilities for web and native mobile applications, allowing for advanced multi-user use cases such as video broadcasting, conferencing, and media recording.
SYS-CON Events announced today that Venafi, the Immune System for the Internet™ and the leading provider of Next Generation Trust Protection, will exhibit at @DevOpsSummit at 19th International Cloud Expo, which will take place on November 1–3, 2016, at the Santa Clara Convention Center in Santa Clara, CA. Venafi is the Immune System for the Internet™ that protects the foundation of all cybersecurity – cryptographic keys and digital certificates – so they can’t be misused by bad guys in attacks...
ReadyTalk has expanded the capabilities of the FoxDen collaboration platform announced late last year to include FoxDen Connect, an in-room video collaboration experience that launches with a single touch. With FoxDen Connect, users can now not only engage in HD video conferencing between iOS and Android mobile devices or Chrome browsers, but also set up in-person meeting rooms for video interactions. A host’s mobile device automatically recognizes the presence of a meeting room via beacon tech...
The cloud market growth today is largely in public clouds. While there is a lot of spend in IT departments in virtualization, these aren’t yet translating into a true “cloud” experience within the enterprise. What is stopping the growth of the “private cloud” market? In his general session at 18th Cloud Expo, Nara Rajagopalan, CEO of Accelerite, explored the challenges in deploying, managing, and getting adoption for a private cloud within an enterprise. What are the key differences between wh...
It’s 2016: buildings are smart, connected and the IoT is fundamentally altering how control and operating systems work and speak to each other. Platforms across the enterprise are networked via inexpensive sensors to collect massive amounts of data for analytics, information management, and insights that can be used to continuously improve operations. In his session at @ThingsExpo, Brian Chemel, Co-Founder and CTO of Digital Lumens, will explore: The benefits sensor-networked systems bring to ...
On Dice.com, the number of job postings asking for skill in Amazon Web Services increased 76 percent between June 2015 and June 2016. Salesforce.com saw its own skill mentions increase 37 percent, while DevOps and Cloud rose 35 percent and 28 percent, respectively. Even as they expand their presence in the cloud, companies are also looking for tech professionals who can manage projects, crunch data, and figure out how to make systems run more autonomously. Mentions of ‘data science’ as a skill ...